Interactive application
VSV Dashboard
An interactive dashboard for exploring vesicular stomatitis transmission dynamics and related epidemic behavior.
Software & Tools
COMPUTATIONAL PRODUCTS
GeoEpi develops reusable software, computational workflows, simulation frameworks, data pipelines, and interactive applications in support of animal-disease research. Some resources are general-purpose analytical tools, while others were developed for specific scientific problems but may be useful or adaptable beyond their original projects.
R package / workflow toolkit
bcapture
Tools for extracting, organizing, validating, summarizing, and viewing data from Biosecurity Compliance Audit Program (bCAP) forms.
Modeling framework / workflow
EpiPlume
Exploratory models of pathogen movement via aerosol, particle, and airborne dispersion, with workflow demonstrations for plume and trajectory analysis.
R package
sequencemap
Converts aligned viral sequences and sampling coordinates into PCA, DAPC, and location-level summaries, with optional spatial prediction of ordination-axis scores.
R package / simulation framework
challengeABM
An agent-based modeling framework simulating within-host dynamics, room-to-room animal experiments, within-herd host transmission, and between-farm spread.
Data pipeline / reproducible workflow
cds-datagrab
A reproducible R-package workflow for retrieving environmental data from the Copernicus Climate Data Store, aligning source data, writing daily GeoTIFFs, and aggregating complete ISO weeks.